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dc.contributor.authorVelankar, Sameer
dc.contributor.authorvan Ginkel, Glen
dc.contributor.authorAlhroub, Younes
dc.contributor.authorBattle, Gary M
dc.contributor.authorBerrisford, John M
dc.contributor.authorConroy, Matthew J
dc.contributor.authorDana, Jose M
dc.contributor.authorGore, Swanand P
dc.contributor.authorGutmanas, Aleksandras
dc.contributor.authorHaslam, Pauline
dc.contributor.authorHendrickx, Pieter MS
dc.contributor.authorLagerstedt, Ingvar
dc.contributor.authorMir, Saqib
dc.contributor.authorMontecelo, Manuel A Fernandez
dc.contributor.authorMukhopadhyay, Abhik
dc.contributor.authorOldfield, Thomas J
dc.contributor.authorPatwardhan, Ardan
dc.contributor.authorSanz-Garcia, Eduardo
dc.contributor.authorSen, Sanchayita
dc.contributor.authorSlowley, Robert A
dc.contributor.authorWainwright, Michael E
dc.contributor.authorDeshpande, Mandar S
dc.contributor.authorIudin, Andrii
dc.contributor.authorSahni, Gaurav
dc.contributor.authorTorres, Jose Salavert
dc.contributor.authorHirshberg, Miriam
dc.contributor.authorMak, Lora
dc.contributor.authorNadzirin, Nurul
dc.contributor.authorArmstrong, David R
dc.contributor.authorClark, Alice R
dc.contributor.authorSmart, Oliver S
dc.contributor.authorKorir, Paul K
dc.contributor.authorKleywegt, Gerard J
dc.date.accessioned2020-07-23T11:17:24Z
dc.date.available2020-07-23T11:17:24Z
dc.date.issued2015-10-17
dc.identifier.citationVelankar, S., van Ginkel, G., Alhroub, Y. et al. (2015) PDBe: improved accessibility of macromolecular structure data from PDB and EMDB, Nucleic Acids Research, 44(D1), pp. D385–D395, https://doi.org/10.1093/nar/gkv1047en
dc.identifier.issn0305-1048en
dc.identifier.pmid26476444 (pubmed)
dc.identifier.doi10.1093/nar/gkv1047en
dc.identifier.urihttp://hdl.handle.net/2436/623390
dc.description© 2015 The Authors. Published by OUP. This is an open access article available under a Creative Commons licence. The published version can be accessed at the following link on the publisher’s website: https://doi.org/10.1093/nar/gkv1047en
dc.description.abstractThe Protein Data Bank in Europe (http://pdbe.org) accepts and annotates depositions of macromolecular structure data in the PDB and EMDB archives and enriches, integrates and disseminates structural information in a variety of ways. The PDBe website has been redesigned based on an analysis of user requirements, and now offers intuitive access to improved and value-added macromolecular structure information. Unique value-added information includes lists of reviews and research articles that cite or mention PDB entries as well as access to figures and legends from full-text open-access publications that describe PDB entries. A powerful new query system not only shows all the PDB entries that match a given query, but also shows the 'best structures' for a given macromolecule, ligand complex or sequence family using data-quality information from the wwPDB validation reports. A PDBe RESTful API has been developed to provide unified access to macromolecular structure data available in the PDB and EMDB archives as well as value-added annotations, e.g. regarding structure quality and up-to-date cross-reference information from the SIFTS resource. Taken together, these new developments facilitate unified access to macromolecular structure data in an intuitive way for non-expert users and support expert users in analysing macromolecular structure data.en
dc.description.sponsorshipThe Wellcome Trust [88944, 104948]; UK Biotechnology and Biological Sciences Research Council [BB/J007471/1, BB/K016970/1, BB/M013146/1, BB/M011674/1]; National Institutes of Health [GM079429]; UK Medical Research Council [MR/L007835/1]; European Union [284209]; CCP4; European Molecular Biology Laboratory (EMBL). Funding for open access charge: The Wellcome Trust.en
dc.formatapplication/pdfen
dc.languageeng
dc.language.isoenen
dc.publisherOxford University Pressen
dc.relation.urlhttps://academic.oup.com/nar/article/44/D1/D385/2502591en
dc.rightsLicence for published version: Creative Commons Attribution 4.0 International
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/
dc.subject.meshMicroscopy, Electron
dc.subject.meshProtein Conformation
dc.subject.meshModels, Molecular
dc.subject.meshInternet
dc.subject.meshUser-Computer Interface
dc.subject.meshDatabases, Protein
dc.titlePDBe: improved accessibility of macromolecular structure data from PDB and EMDBen
dc.typeJournal articleen
dc.identifier.eissn1362-4962
dc.identifier.journalNucleic Acids Researchen
dc.date.updated2020-07-02T13:37:10Z
dc.contributor.institutionProtein Data Bank in Europe, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK sameer@ebi.ac.uk.
pubs.place-of-publicationEngland
dc.date.accepted2015-10-01
rioxxterms.funderThe Wellcome Trust, UK Biotechnology and Biological Sciences Research Council, Medical Research Council, European Union, European Molecular Biology Laboratory (EMBL)en
rioxxterms.identifier.projectBB/G022577/1en
rioxxterms.identifier.projectBB/M011674/1en
rioxxterms.identifier.project88944en
rioxxterms.identifier.projectGM079429en
rioxxterms.identifier.projectMR/L007835/1en
rioxxterms.identifier.projectR01 GM079429en
rioxxterms.identifier.project104948en
rioxxterms.identifier.projectBB/K016970/1en
rioxxterms.identifier.projectBB/M013146/1en
rioxxterms.identifier.projectBB/J007471/1en
rioxxterms.versionVoRen
rioxxterms.licenseref.urihttp://creativecommons.org/licenses/by/4.0/en
rioxxterms.licenseref.startdate2020-07-23en
dc.source.volume44
dc.source.issueD1
dc.source.beginpageD385
dc.source.endpageD395
dc.description.versionPublished version
refterms.dateFCD2020-07-23T11:16:57Z
refterms.versionFCDVoR
refterms.dateFOA2020-07-23T11:17:25Z


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Licence for published version: Creative Commons Attribution 4.0 International
Except where otherwise noted, this item's license is described as Licence for published version: Creative Commons Attribution 4.0 International